About JupyterHub
Jupyter is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more. As such, Jupyterhub, an extension of Jupyter Notebook, is a valuable tool which
- enhances accessibility of high performance computational resources beyond the command line interface
- encourages collaboration across departments
- greatly improves the time from coding to results
Deployed is a JupyterHub environment utilizing Jupyterlab, not the classic Jupyter Notebook. For more on Jupyterlab, see here
Please note that all jobs submitted through this framework have a time limit of 8 hours.
Supported Kernels
Using Jupyterhub to Access ARCC General Purpose Cluster
Note: More information on the general purpose cluster can be found here. You must have a RIT home directory, in order to use this resource. Please contact arcc *at* albany.edu if you need an account.
- Navigate to https://jupytertest.arcc.albany.edu, and log in with your NetID and password.
- Now, you will be prompted to spawn a server. Several options are available for users to select. Please select the appropriate profile from the drop down menu, and do not request more resources than you need. All jobs have a time limit of 8 hours.
- This will spawn Jupyterlab in your /network/rit/home/ directory. You will not be able to navigate to other parts of the file system, unless they are linked to your home directory. However, your code can access any network path that you have permission to access. Note that by default, you will not see the R kernel. Please follow these instructions to enable it
- Happy coding!
Packages Installed
Current package and package versions installed in the base distributions are:
| Code Block | ||
|---|---|---|
| ||
# Name Version Build Channel
_r-mutex 1.0.0 mro_2 r
alembic 0.9.9 py_0 conda-forge
arpack 3.5.0 blas_openblas_202 [blas_openblas] conda-forge
asn1crypto 0.24.0 py36_3 conda-forge
async_generator 1.10 py_0 conda-forge
backcall 0.1.0 py_0 conda-forge
binutils_impl_linux-64 2.31.1 h6176602_1
binutils_linux-64 2.31.1 h6176602_3
blas 1.1 openblas conda-forge
bleach 2.1.4 py_1 conda-forge
bokeh 0.13.0 py36_0 conda-forge
bottleneck 1.2.1 py36h7eb728f_1 conda-forge
bzip2 1.0.6 h470a237_2 conda-forge
ca-certificates 2018.8.24 ha4d7672_0 conda-forge
cairo 1.14.12 h8948797_3
cartopy 0.16.0 py36h81b52dc_2 conda-forge
certifi 2018.8.24 py36_1001 conda-forge
cffi 1.11.5 py36h5e8e0c9_1 conda-forge
cftime 1.0.1 py36h7eb728f_0 conda-forge
chardet 3.0.4 py36_3 conda-forge
click 7.0 py_0 conda-forge
cloudpickle 0.5.6 py_0 conda-forge
configurable-http-proxy 1.3.0 0 conda-forge
cryptography 2.3.1 py36hdffb7b8_0 conda-forge
cryptography-vectors 2.3.1 py36_0 conda-forge
curl 7.61.0 h93b3f91_2 conda-forge
cycler 0.10.0 py_1 conda-forge
cytoolz 0.9.0.1 py36h470a237_0 conda-forge
dask 0.19.2 py_0 conda-forge
dask-core 0.19.2 py_0 conda-forge
dbus 1.13.2 h714fa37_1
decorator 4.3.0 py_0 conda-forge
distributed 1.23.2 py36_0 conda-forge
entrypoints 0.2.3 py36_2 conda-forge
expat 2.2.5 hfc679d8_2 conda-forge
fastcache 1.0.2 py36h470a237_1 conda-forge
fftw 3.3.8 h470a237_0 conda-forge
fontconfig 2.13.0 h9420a91_0
freetype 2.9.1 h6debe1e_4 conda-forge
fribidi 1.0.5 h7b6447c_0
gcc_impl_linux-64 7.3.0 habb00fd_1
gcc_linux-64 7.3.0 h553295d_3
geos 3.6.2 hfc679d8_3 conda-forge
gettext 0.19.8.1 h5e8e0c9_1 conda-forge
gfortran_impl_linux-64 7.3.0 hdf63c60_1
gfortran_linux-64 7.3.0 h553295d_3
glib 2.56.2 h464dc38_0 conda-forge
gmp 6.1.2 hfc679d8_0 conda-forge
gmpy2 2.0.8 py36h10f8cd9_2
graphite2 1.3.12 hfc679d8_1 conda-forge
gst-plugins-base 1.14.0 hbbd80ab_1
gstreamer 1.14.0 hb453b48_1
gxx_impl_linux-64 7.3.0 hdf63c60_1
gxx_linux-64 7.3.0 h553295d_3
h5netcdf 0.6.2 py_0 conda-forge
h5py 2.8.0 py36h7eb728f_2 conda-forge
harfbuzz 1.9.0 hee26f79_1 conda-forge
hdf4 4.2.13 h951d187_2 conda-forge
hdf5 1.10.2 hc401514_2 conda-forge
heapdict 1.0.0 py36_1000 conda-forge
html5lib 1.0.1 py_0 conda-forge
icu 58.2 hfc679d8_0 conda-forge
idna 2.7 py36_2 conda-forge
ipykernel 4.10.0 py36_0 conda-forge
ipyleaflet 0.9.0 py36_1 conda-forge
ipyleaflet 0.9.0 <pip>
ipython 6.5.0 py36_0 conda-forge
ipython_genutils 0.2.0 py_1 conda-forge
ipywidgets 7.4.2 py_0 conda-forge
jedi 0.12.1 py36_0 conda-forge
jinja2 2.10 py_1 conda-forge
jpeg 9c h470a237_1 conda-forge
jsonschema 2.6.0 py36_2 conda-forge
jupyter 1.0.0 py_1 conda-forge
jupyter_client 5.2.3 py_1 conda-forge
jupyter_console 5.2.0 py36_1 conda-forge
jupyter_contrib_core 0.3.3 py_2 conda-forge
jupyter_contrib_nbextensions 0.5.0 py36_0 conda-forge
jupyter_core 4.4.0 py_0 conda-forge
jupyter_highlight_selected_word 0.2.0 py36_0 conda-forge
jupyter_latex_envs 1.4.4 py36_0 conda-forge
jupyter_nbextensions_configurator 0.4.0 py36_0 conda-forge
jupyterhub 0.9.4 py36_0 conda-forge
jupyterhub-ldapauthenticator 1.2.2 py36_0 conda-forge
jupyterlab 0.34.12 py36_0 conda-forge
jupyterlab_launcher 0.13.1 py_2 conda-forge
kiwisolver 1.0.1 py36h2d50403_2 conda-forge
krb5 1.14.6 0 conda-forge
ldap3 2.5.1 py_0 conda-forge
libcurl 7.61.0 h1ad7b7a_0
libffi 3.2.1 hfc679d8_5 conda-forge
libgcc 7.2.0 h69d50b8_2 conda-forge
libgcc-ng 8.2.0 hdf63c60_1
libgfortran 3.0.0 1 conda-forge
libgfortran-ng 7.3.0 hdf63c60_0
libgit2 0.27.4 h5ee2e84_0 conda-forge
libiconv 1.15 h470a237_3 conda-forge
libnetcdf 4.6.1 he6cff42_8 conda-forge
libpng 1.6.35 ha92aebf_2 conda-forge
libsodium 1.0.16 h470a237_1 conda-forge
libssh2 1.8.0 h5b517e9_2 conda-forge
libstdcxx-ng 8.2.0 hdf63c60_1
libtiff 4.0.9 he6b73bb_2 conda-forge
libuuid 1.0.3 1 conda-forge
libxcb 1.13 h470a237_2 conda-forge
libxml2 2.9.8 h422b904_5 conda-forge
libxslt 1.1.32 h88dbc4e_2 conda-forge
locket 0.2.0 py_2 conda-forge
lxml 4.2.5 py36hc9114bc_0 conda-forge
make 4.2.1 h470a237_1002 conda-forge
mako 1.0.7 py_1 conda-forge
markupsafe 1.0 py36h470a237_1 conda-forge
matplotlib 3.0.0 py36h0b34cb6_1 conda-forge
metis 5.1.0 h470a237_3 conda-forge
mistune 0.8.3 py36h470a237_2 conda-forge
mpc 1.1.0 hb705a9b_6 conda-forge
mpfr 4.0.1 h16a7912_0 conda-forge
mpmath 1.0.0 py_0 conda-forge
mro-base 3.5.1 h1c2f66e_0 r
mro-basics 3.5.1 0 r
msgpack-python 0.5.6 py36h2d50403_2 conda-forge
nbconvert 5.3.1 py_1 conda-forge
nbformat 4.4.0 py_1 conda-forge
ncurses 6.1 hfc679d8_1 conda-forge
netcdf4 1.4.1 py36h62672b6_0 conda-forge
nodejs 10.8.0 hfc679d8_1 conda-forge
notebook 5.7.0 py36_0 conda-forge
numpy 1.15.2 py36_blas_openblashd3ea46f_0 [blas_openblas] conda-forge
olefile 0.46 py_0 conda-forge
openblas 0.2.20 8 conda-forge
openlibm 0.5.4 0 conda-forge
openspecfun 0.5.3 h26a2512_0 conda-forge
openssl 1.0.2p h470a237_0 conda-forge
owslib 0.17.0 py_0 conda-forge
packaging 18.0 py_0 conda-forge
pamela 0.3.0 py36_0 conda-forge
pandas 0.23.4 py36hf8a1672_0 conda-forge
pandoc 2.3 0 conda-forge
pandocfilters 1.4.2 py_1 conda-forge
pango 1.42.4 h049681c_0
parso 0.3.1 py_0 conda-forge
partd 0.3.8 py_1 conda-forge
pcre 8.42 h439df22_0
pcre2 10.23 2 conda-forge
pexpect 4.6.0 py36_0 conda-forge
pickleshare 0.7.5 py36_0 conda-forge
pillow 5.2.0 py36hc736899_1 conda-forge
pip 18.0 py36_1 conda-forge
pixman 0.34.0 h470a237_3 conda-forge
proj4 4.9.3 h470a237_8 conda-forge
prometheus_client 0.3.1 py_1 conda-forge
prompt_toolkit 1.0.15 py_1 conda-forge
psutil 5.4.7 py36h470a237_1 conda-forge
pthread-stubs 0.4 h470a237_1 conda-forge
ptyprocess 0.6.0 py36_1000 conda-forge
pyasn1 0.4.4 py_0 conda-forge
pycparser 2.19 py_0 conda-forge
pycurl 7.43.0.2 py36hb7f436b_0
pyepsg 0.3.2 py_1 conda-forge
pygments 2.2.0 py_1 conda-forge
pyopenssl 18.0.0 py36_0 conda-forge
pyparsing 2.2.1 py_0 conda-forge
pyproj 1.9.5.1 py36h508ed2a_5 conda-forge
pyqt 5.6.0 py36h8210e8a_7 conda-forge
pyshp 1.2.12 py_0 conda-forge
pysocks 1.6.8 py36_2 conda-forge
python 3.6.6 h5001a0f_0 conda-forge
python-dateutil 2.7.3 py_0 conda-forge
python-editor 1.0.3 py_0 conda-forge
python-oauth2 1.0.1 py36_0 conda-forge
pytz 2018.5 py_0 conda-forge
pyyaml 3.13 py36h470a237_1 conda-forge
pyzmq 17.1.2 py36hae99301_0 conda-forge
qt 5.6.3 h39df351_1
qtconsole 4.4.1 py36_1 conda-forge
r 3.5.1 mro351_0 r
r-assertthat 0.2.0 mro351hf348343_0 r
r-bh 1.66.0_1 mro351hf348343_0 r
r-bindr 0.1.1 mro351hf348343_0 r
r-bindrcpp 0.2.2 mro351hebc1506_0 r
r-bit 1.1_14 mro351hd10c6a6_0 r
r-bit64 0.9_7 mro351hd10c6a6_0 r
r-blob 1.1.1 mro351hf348343_0 r
r-boot 1.3_20 mro351_0 r
r-checkpoint 0.4.4 mro351_0 r
r-class 7.3_14 mro351hd10c6a6_0 r
r-cli 1.0.0 mro351hf348343_0 r
r-cluster 2.0.7_1 mro351hac1494b_0 r
r-codetools 0.2_15 mro351hf348343_0 r
r-crayon 1.3.4 mro351hf348343_0 r
r-curl 3.2 mro351hd10c6a6_0 r
r-dbi 1.0.0 mro351hf348343_0 r
r-dbplyr 1.2.2 mro351hf348343_0 r
r-deployrrserve 9.0.0 mro351_0 r
r-digest 0.6.15 mro351hd10c6a6_0 r
r-doparallel 1.0.13 mro351_0 r
r-dplyr 0.7.6 mro351hebc1506_0 r
r-fansi 0.2.3 mro351hd10c6a6_0 r
r-foreach 1.5.0 mro351_0 r
r-foreign 0.8_70 mro351_0 r
r-glue 1.3.0 mro351hd10c6a6_0 r
r-iterators 1.0.10 mro351hf348343_0 r
r-jsonlite 1.5 mro351hd10c6a6_0 r
r-kernsmooth 2.23_15 mro351hac1494b_0 r
r-lattice 0.20_35 mro351hd10c6a6_0 r
r-magrittr 1.5 mro351hf348343_0 r
r-mass 7.3_49 mro351_0 r
r-matrix 1.2_14 mro351hac1494b_0 r
r-memoise 1.1.0 mro351hf348343_0 r
r-mgcv 1.8_23 mro351_0 r
r-microsoftr 3.5.0.108 mro351_0 r
r-nlme 3.1_137 mro351hac1494b_0 r
r-nnet 7.3_12 mro351hd10c6a6_0 r
r-pillar 1.3.0 mro351hf348343_0 r
r-pkgconfig 2.0.1 mro351hf348343_0 r
r-plogr 0.2.0 mro351hf348343_0 r
r-png 0.1_7 mro351hd10c6a6_0 r
r-prettyunits 1.0.2 mro351hf348343_0 r
r-purrr 0.2.5 mro351hd10c6a6_0 r
r-r6 2.2.2 mro351hf348343_0 r
r-rcpp 0.12.18 mro351hebc1506_0 r
r-recommended 3.5.1 mro351_0 r
r-revoioq 10.0.0 mro351_0 r
r-revomods 11.0.0 mro351_0 r
r-revoutilsmath 11.0.0 mro351_0 r
r-rlang 0.2.1 mro351hd10c6a6_0 r
r-rpart 4.1_13 mro351hd10c6a6_0 r
r-rsqlite 2.1.1 mro351hebc1506_0 r
r-runit 0.4.26 mro351_0 r
r-spatial 7.3_11 mro351_0 r
r-survival 2.41_3 mro351_0 r
r-tibble 1.4.2 mro351hd10c6a6_0 r
r-tidyselect 0.2.4 mro351hebc1506_0 r
r-utf8 1.1.4 mro351hd10c6a6_0 r
readline 7.0 haf1bffa_1 conda-forge
requests 2.19.1 py36_1 conda-forge
rise 5.4.1 py36_0 conda-forge
rpy2 2.9.4 py36mro351h6853232_0 r
scikit-learn 0.20.0 py36_blas_openblasha84fab4_201 [blas_openblas] conda-forge
scipy 1.1.0 py36_blas_openblash7943236_201 [blas_openblas] conda-forge
send2trash 1.5.0 py_0 conda-forge
setuptools 40.4.0 py36_1000 conda-forge
shapely 1.6.4 py36h164cb2d_1 conda-forge
simplegeneric 0.8.1 py_1 conda-forge
sip 4.18.1 py36hfc679d8_0 conda-forge
six 1.11.0 py36_1 conda-forge
sortedcontainers 2.0.5 py_0 conda-forge
sqlalchemy 1.2.12 py36h470a237_0 conda-forge
sqlite 3.25.2 hb1c47c0_0 conda-forge
suitesparse 4.5.6 blas_openblash55dcaef_201 [blas_openblas] conda-forge
sympy 1.3 py36_0 conda-forge
system 5.8 2 anaconda
tbb 2019.0 h2d50403_0 conda-forge
tblib 1.3.2 py_1 conda-forge
terminado 0.8.1 py36_1 conda-forge
testpath 0.3.1 py36_1 conda-forge
tk 8.6.8 ha92aebf_0 conda-forge
toolz 0.9.0 py_0 conda-forge
tornado 5.1.1 py36h470a237_0 conda-forge
traitlets 4.3.2 py36_0 conda-forge
traittypes 0.2.1 <pip>
traittypes 0.2.1 py_1 conda-forge
urllib3 1.23 py36_1 conda-forge
wcwidth 0.1.7 py_1 conda-forge
webencodings 0.5.1 py_1 conda-forge
wheel 0.31.1 py36_1001 conda-forge
widgetsnbextension 3.4.2 py36_0 conda-forge
xarray 0.10.9 py36_0 conda-forge
xorg-libxau 1.0.8 h470a237_6 conda-forge
xorg-libxdmcp 1.1.2 h470a237_7 conda-forge
xz 5.2.4 h470a237_1 conda-forge
yaml 0.1.7 h470a237_1 conda-forge
zeromq 4.2.5 hfc679d8_6 conda-forge
zict 0.1.3 py_0 conda-forge
zlib 1.2.11 h470a237_3 conda-forge |