About JupyterHub
Jupyter is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more. As such, Jupyterhub, an extension of Jupyter Notebook, is a valuable tool which
- enhances accessibility of high performance computational resources beyond the command line interface
- encourages collaboration across departments
- greatly improves the time from coding to results
Deployed is a JupyterHub environment utilizing Jupyterlab, not the classic Jupyter Notebook. For more on Jupyterlab, see here
Please note that all jobs submitted through this framework have a time limit of 8 hours.
Supported Kernels
Using Jupyterhub to Access ARCC General Purpose Cluster
Note: More information on the general purpose cluster can be found here. You must have a RIT home directory, in order to use this resource. Please contact arcc *at* albany.edu if you need an account.
- Navigate to https://jupyterlab.arcc.albany.edu, and log in with your NetID and password.
- Now, you will be prompted to spawn a server. Several options are available for users to select. Please select the appropriate profile from the drop down menu, and do not request more resources than you need. All jobs have a time limit of 8 hours.
- This will spawn Jupyterlab in your /network/rit/home/ directory. You will not be able to navigate to other parts of the file system, unless they are linked to your home directory. However, your code can access any network path that you have permission to access. Note that by default, you will not see the R kernel. Please follow these instructions to enable it
- Happy coding!
Packages Installed
Current package and package versions installed in the base distributions are:
# Name Version Build Channel alembic 0.9.9 py_0 conda-forge asn1crypto 0.24.0 py36_1003 conda-forge async_generator 1.10 py_0 conda-forge attrs 18.2.0 py_0 conda-forge backcall 0.1.0 py_0 conda-forge biopython 1.72 py36h04863e7_0 anaconda blas 1.0 mkl anaconda bleach 3.0.2 py_1 conda-forge bokeh 1.0.2 py36_1000 conda-forge bzip2 1.0.6 h470a237_2 conda-forge ca-certificates 2018.11.29 ha4d7672_0 conda-forge cartopy 0.17.0 py36h7547761_1 conda-forge certifi 2018.11.29 py36_1000 conda-forge cffi 1.11.5 py36h5e8e0c9_1 conda-forge cftime 1.0.3.4 py36h7eb728f_0 conda-forge chardet 3.0.4 py36_1003 conda-forge click 7.0 py_0 conda-forge cloudpickle 0.6.1 py_0 conda-forge conda 4.5.11 py36_1000 conda-forge conda-env 2.6.0 1 configurable-http-proxy 3.1.0 node8_1 conda-forge cryptography 2.3.1 py36hdffb7b8_0 conda-forge cryptography-vectors 2.3.1 py36_1000 conda-forge curl 7.63.0 h74213dd_0 conda-forge cycler 0.10.0 py_1 conda-forge cytoolz 0.9.0.1 py36h470a237_1 conda-forge dask 1.0.0 py_0 conda-forge dask-core 1.0.0 py_0 conda-forge dask-jobqueue 0.4.1 py_0 conda-forge dbus 1.13.0 h3a4f0e9_0 conda-forge decorator 4.3.0 py_0 conda-forge distributed 1.25.0 py36_1000 conda-forge docrep 0.2.4 py_0 conda-forge entrypoints 0.2.3 py36_1002 conda-forge expat 2.2.5 hfc679d8_2 conda-forge fontconfig 2.13.1 h65d0f4c_0 conda-forge freetype 2.9.1 h6debe1e_4 conda-forge geos 3.6.2 hfc679d8_4 conda-forge gettext 0.19.8.1 h5e8e0c9_1 conda-forge glib 2.56.2 h464dc38_1 conda-forge gmp 6.1.2 hfc679d8_0 conda-forge gst-plugins-base 1.12.5 hde13a9d_0 conda-forge gstreamer 1.12.5 h5856ed1_0 conda-forge hdf4 4.2.13 h951d187_2 conda-forge hdf5 1.10.4 nompi_h5598ddc_1003 conda-forge heapdict 1.0.0 py36_1000 conda-forge icu 58.2 hfc679d8_0 conda-forge idna 2.8 py36_1000 conda-forge intel-openmp 2019.1 144 ipykernel 5.1.0 py36h24bf2e0_1001 conda-forge ipython 7.2.0 py36h24bf2e0_1000 conda-forge ipython_genutils 0.2.0 py_1 conda-forge jedi 0.13.1 py36_1000 conda-forge jinja2 2.10 py_1 conda-forge jpeg 9c h470a237_1 conda-forge jsonschema 3.0.0a3 py36_1000 conda-forge jupyter_client 5.2.4 py_0 conda-forge jupyter_core 4.4.0 py_0 conda-forge jupyterhub 0.9.4 py36_1000 conda-forge jupyterhub-ldapauthenticator 1.2.2 py_1000 conda-forge jupyterlab 0.35.4 py36_0 conda-forge jupyterlab_server 0.2.0 py_0 conda-forge kiwisolver 1.0.1 py36h2d50403_2 conda-forge krb5 1.16.2 hbb41f41_0 conda-forge ldap3 2.5.1 py_0 conda-forge libcurl 7.63.0 hbdb9355_0 conda-forge libedit 3.1.20170329 h6b74fdf_2 libffi 3.2.1 hd88cf55_4 libgcc 7.2.0 h69d50b8_2 conda-forge libgcc-ng 8.2.0 hdf63c60_1 libgfortran 3.0.0 1 conda-forge libgfortran-ng 7.2.0 hdf63c60_3 conda-forge libiconv 1.15 h470a237_3 conda-forge libnetcdf 4.6.2 h85b088c_0 conda-forge libopenblas 0.3.3 h5a2b251_3 libpng 1.6.36 ha92aebf_0 conda-forge libsodium 1.0.16 h470a237_1 conda-forge libssh2 1.8.0 h5b517e9_3 conda-forge libstdcxx-ng 8.2.0 hdf63c60_1 libtiff 4.0.10 he6b73bb_1 conda-forge libuuid 2.32.1 h470a237_2 conda-forge libxcb 1.13 h470a237_2 conda-forge libxml2 2.9.8 h422b904_5 conda-forge libxslt 1.1.32 h88dbc4e_2 conda-forge locket 0.2.0 py_2 conda-forge lxml 4.2.5 py36hc9114bc_0 conda-forge mako 1.0.7 py_1 conda-forge markupsafe 1.1.0 py36h470a237_0 conda-forge matplotlib 3.0.2 py36h8a2030e_1 conda-forge matplotlib-base 3.0.2 py36h20b835b_1 conda-forge mistune 0.8.4 py36h470a237_0 conda-forge mkl 2018.0.3 1 mkl_fft 1.0.10 py36_0 conda-forge mkl_random 1.0.2 py36_0 conda-forge mpi 1.0 openmpi conda-forge mpi4py 3.0.0 py36h10701c6_4 conda-forge msgpack-python 0.6.0 py36h2d50403_0 conda-forge nbconvert 5.3.1 py_1 conda-forge nbformat 4.4.0 py_1 conda-forge nbserverproxy 0.8.8 py_1000 conda-forge ncurses 6.1 hf484d3e_0 netcdf4 1.4.2 py36hf4e5497_1 conda-forge nodejs 8.10.0 0 conda-forge notebook 5.7.2 py36_1000 conda-forge numpy 1.15.4 py36h1d66e8a_0 anaconda numpy-base 1.15.4 py36h81de0dd_0 anaconda olefile 0.46 py_0 conda-forge openblas 0.3.3 ha44fe06_1 conda-forge openmpi 3.1.2 h26a2512_2 conda-forge openssl 1.0.2p h470a237_1 conda-forge owslib 0.17.0 py_0 conda-forge packaging 18.0 py_0 conda-forge pamela 0.3.0 py_1001 conda-forge pandas 0.23.4 py36hf8a1672_0 conda-forge pandoc 2.5 0 conda-forge pandocfilters 1.4.2 py_1 conda-forge parso 0.3.1 py_0 conda-forge partd 0.3.9 py_0 conda-forge pcre 8.41 hfc679d8_3 conda-forge pexpect 4.6.0 py36_1000 conda-forge pickleshare 0.7.5 py36_1000 conda-forge pillow 5.3.0 py36hc736899_0 conda-forge pip 18.1 py36_1000 conda-forge proj4 5.2.0 h470a237_1 conda-forge prometheus_client 0.5.0 py_0 conda-forge prompt_toolkit 2.0.7 py_0 conda-forge psutil 5.4.8 py36h470a237_0 conda-forge pthread-stubs 0.4 h470a237_1 conda-forge ptyprocess 0.6.0 py36_1000 conda-forge pyasn1 0.4.4 py_1 conda-forge pycosat 0.6.3 py36h470a237_1 conda-forge pycparser 2.19 py_0 conda-forge pycurl 7.43.0.2 py36hb7f436b_0 pyepsg 0.4.0 py_0 conda-forge pygments 2.3.0 py_0 conda-forge pykdtree 1.3.1 py36h7eb728f_2 conda-forge pyopenssl 18.0.0 py36_1000 conda-forge pyparsing 2.3.0 py_0 conda-forge pyproj 1.9.5.1 py36h429999c_7 conda-forge pyqt 5.6.0 py36h8210e8a_7 conda-forge pyrsistent 0.14.7 py36h470a237_0 conda-forge pyshp 2.0.0 py_0 conda-forge pysocks 1.6.8 py36_1002 conda-forge python 3.6.6 h5001a0f_0 conda-forge python-dateutil 2.7.5 py_0 conda-forge python-editor 1.0.3 py_0 conda-forge python-oauth2 1.0.1 py36_0 conda-forge pytz 2018.7 py_0 conda-forge pyyaml 3.13 py36h470a237_1 conda-forge pyzmq 17.1.2 py36hae99301_1 conda-forge qt 5.6.2 hf70d934_9 conda-forge readline 7.0 h7b6447c_5 requests 2.13.0 py36_0 conda-forge ruamel_yaml 0.15.71 py36h470a237_0 conda-forge scikit-learn 0.20.1 py36h4989274_0 anaconda scipy 1.1.0 py36hfa4b5c9_1 anaconda send2trash 1.5.0 py_0 conda-forge setuptools 40.6.3 py36_0 conda-forge shapely 1.6.4 py36h164cb2d_1 conda-forge sip 4.18.1 py36hfc679d8_0 conda-forge six 1.12.0 py36_1000 conda-forge sortedcontainers 2.1.0 py_0 conda-forge sqlalchemy 1.2.15 py36h470a237_0 conda-forge sqlite 3.24.0 h84994c4_0 tblib 1.3.2 py_1 conda-forge terminado 0.8.1 py36_1001 conda-forge testpath 0.4.2 py36_1000 conda-forge tk 8.6.8 hbc83047_0 toolz 0.9.0 py_1 conda-forge tornado 5.1.1 py36h470a237_0 conda-forge traitlets 4.3.2 py36_1000 conda-forge urllib3 1.12 py36_0 bioconda wcwidth 0.1.7 py_1 conda-forge webencodings 0.5.1 py_1 conda-forge wheel 0.32.3 py36_0 conda-forge wrapspawner 0.0.1.dev0 <pip> xarray 0.11.0 py36_1000 conda-forge xorg-libxau 1.0.8 h470a237_6 conda-forge xorg-libxdmcp 1.1.2 h470a237_7 conda-forge xz 5.2.4 h14c3975_4 yaml 0.1.7 had09818_2 zeromq 4.2.5 hfc679d8_6 conda-forge zict 0.1.3 py_0 conda-forge zlib 1.2.11 ha838bed_2