About JupyterHub
Jupyter is an open-source web application that allows you to create and share documents that contain live code, equations, visualizations and narrative text. Uses include: data cleaning and transformation, numerical simulation, statistical modeling, data visualization, machine learning, and much more. As such, Jupyterhub, an extension of Jupyter Notebook, is a valuable tool which
- enhances accessibility of high performance computational resources beyond the command line interface
- encourages collaboration across departments
- greatly improves the time from coding to results
Deployed is a JupyterHub environment utilizing Jupyterlab, not the classic Jupyter Notebook. For more on Jupyterlab, see here
Please note that all jobs submitted through this framework have a time limit of 8 hours.
Supported Kernels
Using Jupyterhub to Access ARCC General Purpose Cluster
Note: More information on the general purpose cluster can be found here. You must have a RIT home directory, in order to use this resource. Please contact arcc *at* albany.edu if you need an account.
- Navigate to https://jupytertest.arcc.albany.edu, and log in with your NetID and password.
- Now, you will be prompted to spawn a server. Several options are available for users to select. Please select the appropriate profile from the drop down menu, and do not request more resources than you need. All jobs have a time limit of 8 hours.
- This will spawn Jupyterlab in your /network/rit/home/ directory. You will not be able to navigate to other parts of the file system, unless they are linked to your home directory. However, your code can access any network path that you have permission to access. Note that by default, you will not see the R kernel. Please follow these instructions to enable it
- Happy coding!
Packages Installed
Current package and package versions installed in the base distributions are:
# Name Version Build Channel _r-mutex 1.0.0 mro_2 r alembic 0.9.9 py_0 conda-forge arpack 3.5.0 blas_openblas_202 [blas_openblas] conda-forge asn1crypto 0.24.0 py36_3 conda-forge async_generator 1.10 py_0 conda-forge backcall 0.1.0 py_0 conda-forge binutils_impl_linux-64 2.31.1 h6176602_1 binutils_linux-64 2.31.1 h6176602_3 blas 1.1 openblas conda-forge bleach 2.1.4 py_1 conda-forge bokeh 0.13.0 py36_0 conda-forge bottleneck 1.2.1 py36h7eb728f_1 conda-forge bzip2 1.0.6 h470a237_2 conda-forge ca-certificates 2018.8.24 ha4d7672_0 conda-forge cairo 1.14.12 h8948797_3 cartopy 0.16.0 py36h81b52dc_2 conda-forge certifi 2018.8.24 py36_1001 conda-forge cffi 1.11.5 py36h5e8e0c9_1 conda-forge cftime 1.0.1 py36h7eb728f_0 conda-forge chardet 3.0.4 py36_3 conda-forge click 7.0 py_0 conda-forge cloudpickle 0.5.6 py_0 conda-forge configurable-http-proxy 1.3.0 0 conda-forge cryptography 2.3.1 py36hdffb7b8_0 conda-forge cryptography-vectors 2.3.1 py36_0 conda-forge curl 7.61.0 h93b3f91_2 conda-forge cycler 0.10.0 py_1 conda-forge cytoolz 0.9.0.1 py36h470a237_0 conda-forge dask 0.19.2 py_0 conda-forge dask-core 0.19.2 py_0 conda-forge dbus 1.13.2 h714fa37_1 decorator 4.3.0 py_0 conda-forge distributed 1.23.2 py36_0 conda-forge entrypoints 0.2.3 py36_2 conda-forge expat 2.2.5 hfc679d8_2 conda-forge fastcache 1.0.2 py36h470a237_1 conda-forge fftw 3.3.8 h470a237_0 conda-forge fontconfig 2.13.0 h9420a91_0 freetype 2.9.1 h6debe1e_4 conda-forge fribidi 1.0.5 h7b6447c_0 gcc_impl_linux-64 7.3.0 habb00fd_1 gcc_linux-64 7.3.0 h553295d_3 geos 3.6.2 hfc679d8_3 conda-forge gettext 0.19.8.1 h5e8e0c9_1 conda-forge gfortran_impl_linux-64 7.3.0 hdf63c60_1 gfortran_linux-64 7.3.0 h553295d_3 glib 2.56.2 h464dc38_0 conda-forge gmp 6.1.2 hfc679d8_0 conda-forge gmpy2 2.0.8 py36h10f8cd9_2 graphite2 1.3.12 hfc679d8_1 conda-forge gst-plugins-base 1.14.0 hbbd80ab_1 gstreamer 1.14.0 hb453b48_1 gxx_impl_linux-64 7.3.0 hdf63c60_1 gxx_linux-64 7.3.0 h553295d_3 h5netcdf 0.6.2 py_0 conda-forge h5py 2.8.0 py36h7eb728f_2 conda-forge harfbuzz 1.9.0 hee26f79_1 conda-forge hdf4 4.2.13 h951d187_2 conda-forge hdf5 1.10.2 hc401514_2 conda-forge heapdict 1.0.0 py36_1000 conda-forge html5lib 1.0.1 py_0 conda-forge icu 58.2 hfc679d8_0 conda-forge idna 2.7 py36_2 conda-forge ipykernel 4.10.0 py36_0 conda-forge ipyleaflet 0.9.0 py36_1 conda-forge ipyleaflet 0.9.0 <pip> ipython 6.5.0 py36_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge ipywidgets 7.4.2 py_0 conda-forge jedi 0.12.1 py36_0 conda-forge jinja2 2.10 py_1 conda-forge jpeg 9c h470a237_1 conda-forge jsonschema 2.6.0 py36_2 conda-forge jupyter 1.0.0 py_1 conda-forge jupyter_client 5.2.3 py_1 conda-forge jupyter_console 5.2.0 py36_1 conda-forge jupyter_contrib_core 0.3.3 py_2 conda-forge jupyter_contrib_nbextensions 0.5.0 py36_0 conda-forge jupyter_core 4.4.0 py_0 conda-forge jupyter_highlight_selected_word 0.2.0 py36_0 conda-forge jupyter_latex_envs 1.4.4 py36_0 conda-forge jupyter_nbextensions_configurator 0.4.0 py36_0 conda-forge jupyterhub 0.9.4 py36_0 conda-forge jupyterhub-ldapauthenticator 1.2.2 py36_0 conda-forge jupyterlab 0.34.12 py36_0 conda-forge jupyterlab_launcher 0.13.1 py_2 conda-forge kiwisolver 1.0.1 py36h2d50403_2 conda-forge krb5 1.14.6 0 conda-forge ldap3 2.5.1 py_0 conda-forge libcurl 7.61.0 h1ad7b7a_0 libffi 3.2.1 hfc679d8_5 conda-forge libgcc 7.2.0 h69d50b8_2 conda-forge libgcc-ng 8.2.0 hdf63c60_1 libgfortran 3.0.0 1 conda-forge libgfortran-ng 7.3.0 hdf63c60_0 libgit2 0.27.4 h5ee2e84_0 conda-forge libiconv 1.15 h470a237_3 conda-forge libnetcdf 4.6.1 he6cff42_8 conda-forge libpng 1.6.35 ha92aebf_2 conda-forge libsodium 1.0.16 h470a237_1 conda-forge libssh2 1.8.0 h5b517e9_2 conda-forge libstdcxx-ng 8.2.0 hdf63c60_1 libtiff 4.0.9 he6b73bb_2 conda-forge libuuid 1.0.3 1 conda-forge libxcb 1.13 h470a237_2 conda-forge libxml2 2.9.8 h422b904_5 conda-forge libxslt 1.1.32 h88dbc4e_2 conda-forge locket 0.2.0 py_2 conda-forge lxml 4.2.5 py36hc9114bc_0 conda-forge make 4.2.1 h470a237_1002 conda-forge mako 1.0.7 py_1 conda-forge markupsafe 1.0 py36h470a237_1 conda-forge matplotlib 3.0.0 py36h0b34cb6_1 conda-forge metis 5.1.0 h470a237_3 conda-forge mistune 0.8.3 py36h470a237_2 conda-forge mpc 1.1.0 hb705a9b_6 conda-forge mpfr 4.0.1 h16a7912_0 conda-forge mpmath 1.0.0 py_0 conda-forge mro-base 3.5.1 h1c2f66e_0 r mro-basics 3.5.1 0 r msgpack-python 0.5.6 py36h2d50403_2 conda-forge nbconvert 5.3.1 py_1 conda-forge nbformat 4.4.0 py_1 conda-forge ncurses 6.1 hfc679d8_1 conda-forge netcdf4 1.4.1 py36h62672b6_0 conda-forge nodejs 10.8.0 hfc679d8_1 conda-forge notebook 5.7.0 py36_0 conda-forge numpy 1.15.2 py36_blas_openblashd3ea46f_0 [blas_openblas] conda-forge olefile 0.46 py_0 conda-forge openblas 0.2.20 8 conda-forge openlibm 0.5.4 0 conda-forge openspecfun 0.5.3 h26a2512_0 conda-forge openssl 1.0.2p h470a237_0 conda-forge owslib 0.17.0 py_0 conda-forge packaging 18.0 py_0 conda-forge pamela 0.3.0 py36_0 conda-forge pandas 0.23.4 py36hf8a1672_0 conda-forge pandoc 2.3 0 conda-forge pandocfilters 1.4.2 py_1 conda-forge pango 1.42.4 h049681c_0 parso 0.3.1 py_0 conda-forge partd 0.3.8 py_1 conda-forge pcre 8.42 h439df22_0 pcre2 10.23 2 conda-forge pexpect 4.6.0 py36_0 conda-forge pickleshare 0.7.5 py36_0 conda-forge pillow 5.2.0 py36hc736899_1 conda-forge pip 18.0 py36_1 conda-forge pixman 0.34.0 h470a237_3 conda-forge proj4 4.9.3 h470a237_8 conda-forge prometheus_client 0.3.1 py_1 conda-forge prompt_toolkit 1.0.15 py_1 conda-forge psutil 5.4.7 py36h470a237_1 conda-forge pthread-stubs 0.4 h470a237_1 conda-forge ptyprocess 0.6.0 py36_1000 conda-forge pyasn1 0.4.4 py_0 conda-forge pycparser 2.19 py_0 conda-forge pycurl 7.43.0.2 py36hb7f436b_0 pyepsg 0.3.2 py_1 conda-forge pygments 2.2.0 py_1 conda-forge pyopenssl 18.0.0 py36_0 conda-forge pyparsing 2.2.1 py_0 conda-forge pyproj 1.9.5.1 py36h508ed2a_5 conda-forge pyqt 5.6.0 py36h8210e8a_7 conda-forge pyshp 1.2.12 py_0 conda-forge pysocks 1.6.8 py36_2 conda-forge python 3.6.6 h5001a0f_0 conda-forge python-dateutil 2.7.3 py_0 conda-forge python-editor 1.0.3 py_0 conda-forge python-oauth2 1.0.1 py36_0 conda-forge pytz 2018.5 py_0 conda-forge pyyaml 3.13 py36h470a237_1 conda-forge pyzmq 17.1.2 py36hae99301_0 conda-forge qt 5.6.3 h39df351_1 qtconsole 4.4.1 py36_1 conda-forge r 3.5.1 mro351_0 r r-assertthat 0.2.0 mro351hf348343_0 r r-bh 1.66.0_1 mro351hf348343_0 r r-bindr 0.1.1 mro351hf348343_0 r r-bindrcpp 0.2.2 mro351hebc1506_0 r r-bit 1.1_14 mro351hd10c6a6_0 r r-bit64 0.9_7 mro351hd10c6a6_0 r r-blob 1.1.1 mro351hf348343_0 r r-boot 1.3_20 mro351_0 r r-checkpoint 0.4.4 mro351_0 r r-class 7.3_14 mro351hd10c6a6_0 r r-cli 1.0.0 mro351hf348343_0 r r-cluster 2.0.7_1 mro351hac1494b_0 r r-codetools 0.2_15 mro351hf348343_0 r r-crayon 1.3.4 mro351hf348343_0 r r-curl 3.2 mro351hd10c6a6_0 r r-dbi 1.0.0 mro351hf348343_0 r r-dbplyr 1.2.2 mro351hf348343_0 r r-deployrrserve 9.0.0 mro351_0 r r-digest 0.6.15 mro351hd10c6a6_0 r r-doparallel 1.0.13 mro351_0 r r-dplyr 0.7.6 mro351hebc1506_0 r r-fansi 0.2.3 mro351hd10c6a6_0 r r-foreach 1.5.0 mro351_0 r r-foreign 0.8_70 mro351_0 r r-glue 1.3.0 mro351hd10c6a6_0 r r-iterators 1.0.10 mro351hf348343_0 r r-jsonlite 1.5 mro351hd10c6a6_0 r r-kernsmooth 2.23_15 mro351hac1494b_0 r r-lattice 0.20_35 mro351hd10c6a6_0 r r-magrittr 1.5 mro351hf348343_0 r r-mass 7.3_49 mro351_0 r r-matrix 1.2_14 mro351hac1494b_0 r r-memoise 1.1.0 mro351hf348343_0 r r-mgcv 1.8_23 mro351_0 r r-microsoftr 3.5.0.108 mro351_0 r r-nlme 3.1_137 mro351hac1494b_0 r r-nnet 7.3_12 mro351hd10c6a6_0 r r-pillar 1.3.0 mro351hf348343_0 r r-pkgconfig 2.0.1 mro351hf348343_0 r r-plogr 0.2.0 mro351hf348343_0 r r-png 0.1_7 mro351hd10c6a6_0 r r-prettyunits 1.0.2 mro351hf348343_0 r r-purrr 0.2.5 mro351hd10c6a6_0 r r-r6 2.2.2 mro351hf348343_0 r r-rcpp 0.12.18 mro351hebc1506_0 r r-recommended 3.5.1 mro351_0 r r-revoioq 10.0.0 mro351_0 r r-revomods 11.0.0 mro351_0 r r-revoutilsmath 11.0.0 mro351_0 r r-rlang 0.2.1 mro351hd10c6a6_0 r r-rpart 4.1_13 mro351hd10c6a6_0 r r-rsqlite 2.1.1 mro351hebc1506_0 r r-runit 0.4.26 mro351_0 r r-spatial 7.3_11 mro351_0 r r-survival 2.41_3 mro351_0 r r-tibble 1.4.2 mro351hd10c6a6_0 r r-tidyselect 0.2.4 mro351hebc1506_0 r r-utf8 1.1.4 mro351hd10c6a6_0 r readline 7.0 haf1bffa_1 conda-forge requests 2.19.1 py36_1 conda-forge rise 5.4.1 py36_0 conda-forge rpy2 2.9.4 py36mro351h6853232_0 r scikit-learn 0.20.0 py36_blas_openblasha84fab4_201 [blas_openblas] conda-forge scipy 1.1.0 py36_blas_openblash7943236_201 [blas_openblas] conda-forge send2trash 1.5.0 py_0 conda-forge setuptools 40.4.0 py36_1000 conda-forge shapely 1.6.4 py36h164cb2d_1 conda-forge simplegeneric 0.8.1 py_1 conda-forge sip 4.18.1 py36hfc679d8_0 conda-forge six 1.11.0 py36_1 conda-forge sortedcontainers 2.0.5 py_0 conda-forge sqlalchemy 1.2.12 py36h470a237_0 conda-forge sqlite 3.25.2 hb1c47c0_0 conda-forge suitesparse 4.5.6 blas_openblash55dcaef_201 [blas_openblas] conda-forge sympy 1.3 py36_0 conda-forge system 5.8 2 anaconda tbb 2019.0 h2d50403_0 conda-forge tblib 1.3.2 py_1 conda-forge terminado 0.8.1 py36_1 conda-forge testpath 0.3.1 py36_1 conda-forge tk 8.6.8 ha92aebf_0 conda-forge toolz 0.9.0 py_0 conda-forge tornado 5.1.1 py36h470a237_0 conda-forge traitlets 4.3.2 py36_0 conda-forge traittypes 0.2.1 <pip> traittypes 0.2.1 py_1 conda-forge urllib3 1.23 py36_1 conda-forge wcwidth 0.1.7 py_1 conda-forge webencodings 0.5.1 py_1 conda-forge wheel 0.31.1 py36_1001 conda-forge widgetsnbextension 3.4.2 py36_0 conda-forge xarray 0.10.9 py36_0 conda-forge xorg-libxau 1.0.8 h470a237_6 conda-forge xorg-libxdmcp 1.1.2 h470a237_7 conda-forge xz 5.2.4 h470a237_1 conda-forge yaml 0.1.7 h470a237_1 conda-forge zeromq 4.2.5 hfc679d8_6 conda-forge zict 0.1.3 py_0 conda-forge zlib 1.2.11 h470a237_3 conda-forge